Anderson lab members are in bold.



Mackey, A.I., Fillinger, R.J., Thomson, G.J., Cuomo, C.A., Bennett, R.J., and Anderson, M.Z. Aneuploidy confers a unique transcriptional and phenotypic profile to Candida albicans (submitted)

Fillinger, R.J., Mishra, A., Mackey, A.I, Filler, S.G., Bennett, R.J., and Anderson, M.Z. Parasex produces highly recombinant progeny in Candida albicans (under review).

Woodruff, A.L., Berman, J., and Anderson, M.Z. Strain background of Candida albicans interacts with SIR2 to alter phenotypic switching (in revision).

Crouch, A.L., Monsey, L., Ramos, C., Yracheta, J.M., and Anderson, M.Z. Metagenomic discovery of microbial eukaryotes in host-associated microbiomes (in revision)

Fletcher, J., Frawley, D., O’Connor-Moneley, J., Woodruff, A.L., Hendricks, S., Alaalm, L., Estevez, S.V., Buscaino, A., Anderson, M.Z., Sullivan, D.J., and Moran, G.P. Members of the TLO gene family in Candida albicans show common and gene-specific functions affecting a wide range of cellular activities (accepted, PLoS Genetics).

Handsley-Davis, M., Anderson, M.Z., Bader, A.C., Fox, K., Kowal, E., and Weyrich, L.S. 2023. Microbiome ownership for Indigenous peoples. Nat Microbiol. 8: 1777-1786. PMID: 37770744.

Bader, A.*, Van Zuylen, E., Pollet, R., Ehau-Taumauna, H., Alegado, R., Handsley-Davis, M., Weyrich, L.S., and Anderson, M.Z.* 2023. A relational framework for microbiome research with Indigenous communities. Nat Microbiol. 8: 1768-1776. PMID: 37770743.

Klaver, A.M., Alexander, K., Almeida, D., Anderson, M.Z., Ball, R.L., Beamer, G., Chandler, B., Claeys, T.A., Concha, A.E., Converse, P.J., Derbyshire, K.M., Dobos, K.M., Duprik, K.M., Endsley, J.J., Endsley, M.A., Fennelly, K., Franco-Paredes, C., Hagge, D.A., Hall-Stoodley, L., Hayes Jr, D., Honda, J.R., Hull, N.M., Kramnik, I., Lacourciere, K., Lahiri, R., Lamont, E., Lemaire, T., Larsen, M.H., Lee, N.L., Lowry, C.A., Mahfooz, N.S., McMichael, T.M., Merling, M.A., Miller, M.A., Nagaiyothi, J.F., Nelson, E., Nuermberger, E.L., Pena, M.T., Podell, B.K., Pyle, C.J., Quinn, F.D., Rajaram, M.V.S., Rosas Meija, O., Rothoff, M., Sago, S.A., Salvador, L.C.M., Simonson, A.W., Spencer, J.S., Sreevatsan, S., Subbian, S., Sunstrum, J., Tobin, D.M., Vijayan, K.K.V., Wright, C.T.O., Richardson, R.T. 2023. The Many Hosts of Mycobacterium (MHM9): A conference report. Tuberculosis. 142: 102377. PMID: 37531864.



Dunn, M.J., Shazib, S.U.A., Simonton, E., Slot, J., and Anderson, M.Z. 2022. Architectural groups of a subtelomeric gene family evolve along distinct paths in Candida albicans. G3. 12: jkac293. PMID: 36269198.

Nastasi, N., Anderson, M. Z., Balasubrahmaniam, N., Bope, A., Britt Jr., R. D., Cochran, S. J., Gill, Hegarty, B., Lee, J., Stamps, B. W., Stickney, A., Taylor, C. G., Tram, N. K., Van Dusen. J., Varaljay, V. A., Weir, M. H., Horack, J. M., Oglesbee, M., Sullivan, M. B., and Dannemiller, K. C., “Application of emerging innovations in microbiome science to space development and settlement systems,” 73rdInternational Astronautical Congress, Paris, France, September 18-22, 2022.

Sindledecker, D., Dunn, M.J., Anderson, M.Z., and Stoodley, P. 2022. Genomic and transcriptomic profiling of phoenix colonies. Sci Reports. 12: 13726. PMID: 35962051.

McCartney, A.M., Anderson, J., Liggins, L., Hudson, M., Anderson, M.Z., TeAika, B., Geary, J., Cook-Deegan, R., Patel, H., and Phillippy, A.M. 2022. Balancing openness with Indigenous data sovereignty – an opportunity to leave no one behind in the journey to sequence all of life. PNAS. 119: e2115860119.



Mishra, A., Forche, A., and Anderson, M.Z. 2021. Parasexuality in Candida albicans. Frontiers Cell Infect Micro. 11: 796929. PMID: 34966696.

Wang, J.M.*, Woodruff, A.L.*, Dunn, M.J., Fillinger, R.J., Bennett, R.J., and Anderson, M.Z. 2021. Intraspecies transcriptional profiling reveals key regulators of Candida albicans pathogenic traits. mBio. 12: e00586-21. PMID 33879584.

Serrano, J., Smith, K.R., Crouch, A.L., Sharma, V., Yi, F., Vargova, V., LaMoia, T.E., Dupont, L.M., Serna, V., Tang, F., Gomes-Dias, L., Blakeslee, J., Hatzakis, E., Peterson, S.N., Anderson, M., Pratley, R.E., and Kyriazis, G.A. 2021. High-dose saccharin supplementation does not induce gut microbiota changes or glucose intolerance in healthy humans and mice. Microbiome. 12: 11. PMID 33431052



Dunn, M.J., Fillinger, R.J., Anderson, L.M., and Anderson, M.Z. 2020. Automated quantification of biofilm-related phenotypes reveals additive contribution to biofilm production. npj Biofilms & Microbiomes. 6: 36. PMID 33037223

Sindledecker, D., Moore, K., Li, A., Wozniak, D.J., Anderson, M.Z., Dusane, D.H., Stoodley, P. 2020. Novel aminoglycoside tolerant “phoenix” colony variants of Pseudomonas aeruginosa. Antimicrob Agents Chemother. 64: e00623-20. PMID 32540981

Chemudupati, M., Smith, A., Fillinger, R.J., Kenney, A., Zhang, L., Zani, A., Liu, S.L., Anderson, M.Z., Sharma, A., and Yount, J. 2020. Butyrate reprograms expression of specific interferon stimulated genes. J. Virol. 94: e00326-20. PMID 32461320

Cullen, C.M., Beyhan, S., Cho, C.E., Wolosyznek, S., Convertino, M., McCoy, S.J., Zhang, Y., Anderson, M.Z., Alvarez-Ponce, D., Smirnova, E., Karstens, L., Dorrestein, P.C., Li, H., Gupta, A.S., Cheung, K., Powers, J.G., Zhao, Z., Rosen, G. 2020. Emerging priorities for microbiome research. Frontiers in Microbiology. 11: 136. PMID 32140140



Dunn, M.J. and Anderson M.Z. 2019. To repeat or not to repeat: Repetitive sequences regulate genome stability in Candida albicans. Genes. 10: e866. PMID 31671659

Best, L.G., Balakrishnan, P., Cole, S.A., Haack, K., Kocarnik, J.M., Pankratz, N., Anderson, M.Z., FrancescHoward, B.V., Lee, E.T., North, hini, N., K.E., Umans, J.G., Yracheta, J.M., Navas-Aden, A., and Voruganti, V.S. 2019. Genetic analysis of hsCRP in American Indians: The Strong Heart Family Study. PLoS One. 14: e0223574. PMID 31622379

Ene, I.V., Bennett, R.J., and Anderson, M.Z. 2019. Mechanisms of genome evolution in Candida albicans. Curr Op Micro. 52: 47-54. PMID 31176092

 Anderson, M.Z.*, Thompson, G., Clark, M., Hirakawa, M.P., and Bennett, R.J.* 2019. A ‘parameiosis’ drives depolyploidization and homologous recombination in Candida albicans. Nat Comm. 10: 4388. PMID 31558727

Anderson, M.Z. 2019. Considering Complex Mutational Processes that Shape Microbial Virulence. mSphere. 4: e00578-19. PMID 31434751

Fillinger, R.J. and Anderson, M.Z. 2019. Seasons of change: Genome evolution of human fungal pathogens. Infection, Genetics and Evolution. 70: 165-174. PMID 30826447

Liang, S., Anderson, M.Z., Hirakawa, M.P., Wang, J.M., Ene, I.V., Frazer, C., Alaalm, L.M., Thomson, G.J., and Bennett, R.J. 2019. Hemizygosity enables a mutational transition governing fungal virulence and commensalism. Cell Host & Microbe. 25: 1-14. PMID 30824263

Monsey, L., Best, L.G., Zhu, J., DeCroo, S., and Anderson, M.Z. 2019. The Association of Mannose Binding Lectin Genotype and Immune Response to Chlamydia pneumoniae: The Strong Heart Study. PLoS One. 14: e0210640. PMID 30629683

Moran, G.C., Anderson, M.Z., Myers, L.C., and Sullivan, D.J. 2019. Role of Mediator in virulence and antifungal drug resistance in pathogenic fungi. Curr Genet. 65:1-10. PMID 30637479



Dunn, M.J., Woodruff, A., and Anderson, M.Z. 2018. The Galleria mellonella waxworm infectiou model for disseminated candidiasis. J. Vis. Exp. 141: e58914. PMID 30507902

Wang, J.A., Bennett, R.J. *, and Anderson, M.Z.* 2018. The genome of the human pathogen Candida albicans is shaped by mutation and cryptic sexual recombination. mBio. 9: e01205-18. PMID 30228236

Uppuluri, P., Liu, N.N., Dunn, M.J., Anderson, M.Z., Berman, J., Lopez-Ribot, J.L., and Koehler, J. 2018. Candida albicans dispersed cells are developmentally distinct from biofilm and planktonic cells. mBio. 9: e01338-18. PMID 30131358

Claw, K.G., Anderson, M.Z., Begay, R.L., Tsosie, K.S., Fox, K., Garrison, N.A., the SING Consortium. 2018. A framework for enhancing ethical genomic research with Indigenous communities. Nat Comm. 9: 2957. PMID: 30054469.

Dunn, M.J., Kinney, G., Washinton, P., and Anderson, M.Z. 2018. Functional diversification accompanies gene family expansion of MED2 homologs in Candida albicans. PLoS Genetics. 14: e1007326. PMID 29630599

Bardill, J., Bader, A.C., Garrison, N.A., Bolnick, D.A., Ruff, J.A., Walker, A., Malhi, R.S., and the SING Consortium. 2018. Advancing the Ethics of Paleogenomics: shifting the Status Quo on Community Consultation. Science: 360: 384-5. PMID: 29700256



Kenny, A., Dowdle, J.A., Bozzacco, L., McMichael, T.M., St Gelais, C., Panfil, A.R., Sun, Y., Anderson, M.Z., Green, P.L., Lopez, C.B., Rosenberg, B.R., Wu, L., and Yount, J.S. 2017. Human genetic determinants of viral diseases. Annual Rev Genetics. 51: 241-263. PMID 28853921.